Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Traf1P39428 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC14.56□□□□□ -0.08
Traf1P39428 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Traf1P39428 Gm44851-201ENSMUST00000205735 2309 ntBASIC14.56□□□□□ -0.08
Traf1P39428 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Traf1P39428 Gm8862-201ENSMUST00000198379 1346 ntBASIC14.56□□□□□ -0.08
Traf1P39428 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC14.56□□□□□ -0.08
Traf1P39428 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.56□□□□□ -0.08
Traf1P39428 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 Gm37324-201ENSMUST00000194500 4504 ntBASIC14.55□□□□□ -0.08
Traf1P39428 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Gm14109-201ENSMUST00000118814 309 ntBASIC14.55□□□□□ -0.08
Traf1P39428 Gm13665-201ENSMUST00000120830 528 ntBASIC14.55□□□□□ -0.08
Traf1P39428 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Traf1P39428 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC14.55□□□□□ -0.08
Traf1P39428 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC14.55□□□□□ -0.08
Traf1P39428 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC14.55□□□□□ -0.08
Traf1P39428 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC14.55□□□□□ -0.08
Traf1P39428 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Traf1P39428 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Traf1P39428 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC14.54□□□□□ -0.08
Traf1P39428 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Gm2383-201ENSMUST00000181461 807 ntBASIC14.54□□□□□ -0.08
Traf1P39428 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC14.54□□□□□ -0.08
Traf1P39428 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 AC161537.1-201ENSMUST00000226199 1015 ntBASIC14.54□□□□□ -0.08
Traf1P39428 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Traf1P39428 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
Traf1P39428 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Traf1P39428 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Traf1P39428 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Traf1P39428 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms