Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm12882-201ENSMUST00000121696 517 ntBASIC10.19□□□□□ -0.78
Cdx1P18111 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC10.19□□□□□ -0.78
Cdx1P18111 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
Cdx1P18111 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx1P18111 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC10.19□□□□□ -0.78
Cdx1P18111 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdx1P18111 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdx1P18111 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Gm3052-202ENSMUST00000188254 2224 ntBASIC10.19□□□□□ -0.78
Cdx1P18111 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdx1P18111 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Cdx1P18111 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
Cdx1P18111 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Cdx1P18111 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Cdx1P18111 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
Cdx1P18111 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC10.18□□□□□ -0.78
Cdx1P18111 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC10.18□□□□□ -0.78
Cdx1P18111 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC10.18□□□□□ -0.78
Cdx1P18111 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Gm45667-201ENSMUST00000210380 1316 ntBASIC10.18□□□□□ -0.78
Cdx1P18111 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Cdx1P18111 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC10.18□□□□□ -0.78
Cdx1P18111 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC10.18□□□□□ -0.78
Cdx1P18111 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Gm27701-201ENSMUST00000184498 110 ntBASIC10.18□□□□□ -0.78
Cdx1P18111 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC10.18□□□□□ -0.78
Cdx1P18111 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC10.18□□□□□ -0.78
Cdx1P18111 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 AC153962.4-201ENSMUST00000217878 242 ntBASIC10.18□□□□□ -0.78
Cdx1P18111 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC10.18□□□□□ -0.78
Cdx1P18111 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC10.18□□□□□ -0.78
Cdx1P18111 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC10.18□□□□□ -0.78
Cdx1P18111 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC10.18□□□□□ -0.78
Cdx1P18111 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Cdx1P18111 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Gm45684-201ENSMUST00000210244 1571 ntBASIC10.18□□□□□ -0.78
Cdx1P18111 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Cdx1P18111 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Cdx1P18111 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Cdx1P18111 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC10.17□□□□□ -0.78
Cdx1P18111 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Cdx1P18111 Gm6283-201ENSMUST00000182369 1000 ntBASIC10.17□□□□□ -0.78
Cdx1P18111 Gm21470-201ENSMUST00000187680 696 ntBASIC10.17□□□□□ -0.78
Cdx1P18111 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC10.17□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms