Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 AC154747.3-201ENSMUST00000224471 3470 ntBASIC14.83□□□□□ -0.04
Col3a1P08121 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col3a1P08121 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.83□□□□□ -0.04
Col3a1P08121 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Col3a1P08121 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col3a1P08121 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col3a1P08121 Gm12501-201ENSMUST00000119163 529 ntBASIC14.82□□□□□ -0.04
Col3a1P08121 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC14.82□□□□□ -0.04
Col3a1P08121 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC14.82□□□□□ -0.04
Col3a1P08121 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Col3a1P08121 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col3a1P08121 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Col3a1P08121 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Col3a1P08121 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Col3a1P08121 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC14.82□□□□□ -0.04
Col3a1P08121 Gm3332-201ENSMUST00000189337 928 ntBASIC14.82□□□□□ -0.04
Col3a1P08121 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC14.82□□□□□ -0.04
Col3a1P08121 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC14.82□□□□□ -0.04
Col3a1P08121 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Col3a1P08121 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Col3a1P08121 Gm5847-201ENSMUST00000178959 1595 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Gm37131-201ENSMUST00000192502 1561 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Col3a1P08121 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.81□□□□□ -0.04
Col3a1P08121 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
Col3a1P08121 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Col3a1P08121 Gm9072-201ENSMUST00000218390 1514 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Gm14724-201ENSMUST00000118400 537 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Gm5419-201ENSMUST00000119301 527 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Gm13408-201ENSMUST00000119822 798 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Gm13935-201ENSMUST00000121859 798 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Gm25881-201ENSMUST00000157783 103 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC14.81□□□□□ -0.04
Col3a1P08121 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC14.81□□□□□ -0.04
Col3a1P08121 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC14.81□□□□□ -0.04
Col3a1P08121 Gm4157-201ENSMUST00000211647 679 ntBASIC14.81□□□□□ -0.04
Col3a1P08121 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col3a1P08121 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col3a1P08121 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Col3a1P08121 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col3a1P08121 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.8□□□□□ -0.04
Col3a1P08121 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms