Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Gm43365-201ENSMUST00000196522 2106 ntBASIC10.39□□□□□ -0.75
Hmgb3O54879 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Hmgb3O54879 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Hmgb3O54879 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 AC154262.2-202ENSMUST00000225158 1331 ntBASIC10.38□□□□□ -0.75
Hmgb3O54879 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Polq-202ENSMUST00000071452 7290 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gne-201ENSMUST00000030201 5384 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gm43703-201ENSMUST00000200523 763 ntBASIC10.38□□□□□ -0.75
Hmgb3O54879 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gm45484-201ENSMUST00000210310 1141 ntBASIC10.38□□□□□ -0.75
Hmgb3O54879 AC134335.2-201ENSMUST00000227660 440 ntBASIC10.38□□□□□ -0.75
Hmgb3O54879 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gm4780-202ENSMUST00000215200 2644 ntBASIC10.38□□□□□ -0.75
Hmgb3O54879 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Clic5-201ENSMUST00000024755 5870 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Sptan1-205ENSMUST00000113719 8018 ntTSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Kif13b-203ENSMUST00000224503 8865 ntAPPRIS ALT2 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hmgb3O54879 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
Hmgb3O54879 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Zcchc4-201ENSMUST00000031077 5743 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Vwa5b1-201ENSMUST00000030533 7486 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC10.37□□□□□ -0.75
Hmgb3O54879 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm3436-201ENSMUST00000179930 840 ntBASIC10.37□□□□□ -0.75
Hmgb3O54879 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Gm38294-201ENSMUST00000192831 381 ntBASIC10.37□□□□□ -0.75
Hmgb3O54879 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hmgb3O54879 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC10.37□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 177.8 ms