Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Scn4aQ9ER60 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Nptn-202ENSMUST00000114121 863 ntTSL 5 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 0610037L13Rik-206ENSMUST00000120473 835 ntTSL 2 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Gm13827-201ENSMUST00000148801 372 ntBASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Gm37257-201ENSMUST00000194871 717 ntTSL 5 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Gm2553-201ENSMUST00000215986 605 ntBASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Mrps36-203ENSMUST00000109333 701 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Gm16048-201ENSMUST00000134250 663 ntTSL 3 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Gm18552-201ENSMUST00000187425 538 ntBASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Gm2474-201ENSMUST00000195162 559 ntBASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Scn4aQ9ER60 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Tex29-204ENSMUST00000166638 561 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Gm17709-201ENSMUST00000174536 1096 ntBASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Gm28415-201ENSMUST00000187528 452 ntTSL 2 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC16.67■□□□□ 0.26
Scn4aQ9ER60 AC156790.2-201ENSMUST00000227115 568 ntBASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Prr19-201ENSMUST00000080288 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Krtap12-1-201ENSMUST00000092370 656 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Scn4aQ9ER60 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm13981-201ENSMUST00000122360 447 ntBASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm26174-201ENSMUST00000158415 219 ntBASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm17944-201ENSMUST00000186351 643 ntBASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 AC124687.5-201ENSMUST00000222734 596 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm14005-210ENSMUST00000225087 1413 ntBASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm6216-201ENSMUST00000182390 687 ntBASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Gm43866-201ENSMUST00000203894 839 ntBASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
Scn4aQ9ER60 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms