Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm4986-201ENSMUST00000119731 549 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm11591-201ENSMUST00000120063 702 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm12363-201ENSMUST00000122250 668 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm6992-201ENSMUST00000217973 1607 ntBASIC14.12□□□□□ -0.15
Ushbp1Q8R370 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm20482-202ENSMUST00000174729 825 ntBASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm4819-201ENSMUST00000182170 1009 ntBASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm32025-201ENSMUST00000217960 307 ntBASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm7046-201ENSMUST00000221351 977 ntBASIC14.11□□□□□ -0.15
Ushbp1Q8R370 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ushbp1Q8R370 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Gm7809-201ENSMUST00000153199 742 ntBASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Gm25668-201ENSMUST00000157700 129 ntBASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Gm16296-201ENSMUST00000159905 325 ntBASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms