Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ubp1Q811S7 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Ubp1Q811S7 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ubp1Q811S7 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ubp1Q811S7 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ubp1Q811S7 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ubp1Q811S7 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.46□□□□□ -0.41
Ubp1Q811S7 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.46□□□□□ -0.41
Ubp1Q811S7 Gm38002-201ENSMUST00000193255 180 ntBASIC12.46□□□□□ -0.41
Ubp1Q811S7 Gm38092-201ENSMUST00000195600 653 ntBASIC12.46□□□□□ -0.41
Ubp1Q811S7 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Gm10478-201ENSMUST00000084451 396 ntBASIC12.46□□□□□ -0.41
Ubp1Q811S7 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ubp1Q811S7 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Gm8228-201ENSMUST00000189949 2192 ntBASIC12.46□□□□□ -0.42
Ubp1Q811S7 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ubp1Q811S7 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.45□□□□□ -0.42
Ubp1Q811S7 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Gm12329-201ENSMUST00000120829 1007 ntBASIC12.45□□□□□ -0.42
Ubp1Q811S7 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.45□□□□□ -0.42
Ubp1Q811S7 AC154462.2-201ENSMUST00000227519 370 ntBASIC12.45□□□□□ -0.42
Ubp1Q811S7 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC12.45□□□□□ -0.42
Ubp1Q811S7 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Ubp1Q811S7 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.44□□□□□ -0.42
Ubp1Q811S7 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.44□□□□□ -0.42
Ubp1Q811S7 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ubp1Q811S7 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms