Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.83□□□□□ -0.04
Trim56Q80VI1 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trim56Q80VI1 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.82□□□□□ -0.04
Trim56Q80VI1 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Gm31256-201ENSMUST00000194705 506 ntBASIC14.82□□□□□ -0.04
Trim56Q80VI1 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC14.82□□□□□ -0.04
Trim56Q80VI1 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Gm45342-201ENSMUST00000210903 1363 ntBASIC14.82□□□□□ -0.04
Trim56Q80VI1 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trim56Q80VI1 Ntrk2-204ENSMUST00000224259 3049 ntBASIC14.82□□□□□ -0.04
Trim56Q80VI1 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.81□□□□□ -0.04
Trim56Q80VI1 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Gm14381-201ENSMUST00000122105 414 ntBASIC14.81□□□□□ -0.04
Trim56Q80VI1 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC14.81□□□□□ -0.04
Trim56Q80VI1 Gm28882-201ENSMUST00000185504 314 ntBASIC14.81□□□□□ -0.04
Trim56Q80VI1 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.81□□□□□ -0.04
Trim56Q80VI1 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trim56Q80VI1 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 AC154171.1-201ENSMUST00000224610 643 ntBASIC14.8□□□□□ -0.04
Trim56Q80VI1 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trim56Q80VI1 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms