Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC16.22■□□□□ 0.19
Trim28Q62318 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC16.22■□□□□ 0.19
Trim28Q62318 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC16.22■□□□□ 0.19
Trim28Q62318 Gm270-201ENSMUST00000223010 976 ntBASIC16.22■□□□□ 0.19
Trim28Q62318 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trim28Q62318 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC16.22■□□□□ 0.19
Trim28Q62318 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC16.21■□□□□ 0.19
Trim28Q62318 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Trim28Q62318 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
Trim28Q62318 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC16.21■□□□□ 0.19
Trim28Q62318 Gm15515-201ENSMUST00000117827 822 ntBASIC16.21■□□□□ 0.19
Trim28Q62318 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC16.21■□□□□ 0.19
Trim28Q62318 Gm18734-201ENSMUST00000172937 808 ntBASIC16.21■□□□□ 0.19
Trim28Q62318 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Gm18753-201ENSMUST00000201000 566 ntBASIC16.21■□□□□ 0.19
Trim28Q62318 Gm4607-201ENSMUST00000206649 577 ntBASIC16.21■□□□□ 0.19
Trim28Q62318 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC16.21■□□□□ 0.19
Trim28Q62318 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC16.21■□□□□ 0.19
Trim28Q62318 AC131330.1-201ENSMUST00000227814 1015 ntBASIC16.21■□□□□ 0.19
Trim28Q62318 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Trim28Q62318 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim28Q62318 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Trim28Q62318 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 AC160405.1-201ENSMUST00000218207 1545 ntBASIC16.2■□□□□ 0.18
Trim28Q62318 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC16.2■□□□□ 0.18
Trim28Q62318 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Trim28Q62318 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Trim28Q62318 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC16.2■□□□□ 0.18
Trim28Q62318 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 Gm28071-201ENSMUST00000190355 478 ntBASIC16.2■□□□□ 0.18
Trim28Q62318 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC16.2■□□□□ 0.18
Trim28Q62318 Gm43138-201ENSMUST00000199123 708 ntBASIC16.2■□□□□ 0.18
Trim28Q62318 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
Trim28Q62318 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim28Q62318 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trim28Q62318 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 AC159195.1-201ENSMUST00000225867 2086 ntBASIC16.19■□□□□ 0.18
Trim28Q62318 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC16.19■□□□□ 0.18
Trim28Q62318 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm28719-201ENSMUST00000187779 1757 ntBASIC16.19■□□□□ 0.18
Trim28Q62318 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trim28Q62318 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
Trim28Q62318 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm26286-201ENSMUST00000104166 134 ntBASIC16.19■□□□□ 0.18
Trim28Q62318 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC16.19■□□□□ 0.18
Trim28Q62318 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim28Q62318 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms