Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Mir1247-201ENSMUST00000116706 82 ntBASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Gm9823-201ENSMUST00000051212 327 ntBASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3bQ3ULL6 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gm45930-201ENSMUST00000221330 292 ntBASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 CU024892.2-201ENSMUST00000224608 832 ntBASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gm10371-202ENSMUST00000228010 1081 ntBASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3bQ3ULL6 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm11964-201ENSMUST00000120982 444 ntBASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm38158-201ENSMUST00000194617 339 ntBASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm42693-201ENSMUST00000196779 631 ntBASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm44405-201ENSMUST00000198952 126 ntBASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gm45925-201ENSMUST00000218882 744 ntBASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3bQ3ULL6 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3bQ3ULL6 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.46□□□□□ -0.26
Upf3bQ3ULL6 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms