Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Sox9Q04887 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.99□□□□□ -0.33
Sox9Q04887 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm23596-201ENSMUST00000104304 132 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm11451-201ENSMUST00000118946 630 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm25545-201ENSMUST00000122673 323 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm23085-201ENSMUST00000157849 293 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm5621-201ENSMUST00000187303 640 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC12.99□□□□□ -0.33
Sox9Q04887 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.99□□□□□ -0.33
Sox9Q04887 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Sox9Q04887 Mirlet7i-201ENSMUST00000083472 85 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Gm8325-201ENSMUST00000099086 453 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Gm5639-201ENSMUST00000122305 2403 ntBASIC12.99□□□□□ -0.33
Sox9Q04887 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.99□□□□□ -0.33
Sox9Q04887 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sox9Q04887 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
Sox9Q04887 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Sox9Q04887 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Sox9Q04887 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC12.98□□□□□ -0.33
Sox9Q04887 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC12.98□□□□□ -0.33
Sox9Q04887 Gm12969-201ENSMUST00000120199 1004 ntBASIC12.98□□□□□ -0.33
Sox9Q04887 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC12.98□□□□□ -0.33
Sox9Q04887 Gm16296-201ENSMUST00000159905 325 ntBASIC12.98□□□□□ -0.33
Sox9Q04887 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC12.98□□□□□ -0.33
Sox9Q04887 Gm43962-201ENSMUST00000203898 190 ntBASIC12.98□□□□□ -0.33
Sox9Q04887 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC12.98□□□□□ -0.33
Sox9Q04887 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Gm6781-201ENSMUST00000038304 1242 ntBASIC12.98□□□□□ -0.33
Sox9Q04887 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sox9Q04887 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Sox9Q04887 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Sox9Q04887 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms