Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm11450-201ENSMUST00000121144 333 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm38210-201ENSMUST00000191944 809 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm38092-201ENSMUST00000195600 653 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm19287-201ENSMUST00000203190 358 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 AC166051.1-201ENSMUST00000214313 210 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 AC166344.1-202ENSMUST00000224139 234 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 AC091458.1-201ENSMUST00000220902 1361 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Gm5639-201ENSMUST00000122305 2403 ntBASIC10.75□□□□□ -0.69
Col8a1Q00780 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Col8a1Q00780 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Col8a1Q00780 Il17rd-203ENSMUST00000225146 3366 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm12626-201ENSMUST00000117339 1983 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm12623-201ENSMUST00000119849 1983 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm15711-201ENSMUST00000118889 535 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm12380-201ENSMUST00000119012 544 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm6963-201ENSMUST00000147879 379 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm6254-201ENSMUST00000168178 1072 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm29615-201ENSMUST00000185371 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28224-201ENSMUST00000186078 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm29001-201ENSMUST00000186177 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28292-201ENSMUST00000186593 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28101-201ENSMUST00000187608 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm29076-201ENSMUST00000187689 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28302-201ENSMUST00000187931 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28646-201ENSMUST00000188220 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28205-201ENSMUST00000189177 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm29032-201ENSMUST00000189797 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm28695-201ENSMUST00000190300 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm37448-201ENSMUST00000192795 697 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC10.74□□□□□ -0.69
Col8a1Q00780 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 AC135669.1-202ENSMUST00000216742 540 ntBASIC10.74□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms