Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Tpm1P58771 Gm6263-201ENSMUST00000120029 1342 ntBASIC14.04□□□□□ -0.16
Tpm1P58771 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Tpm1P58771 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Tpm1P58771 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Tpm1P58771 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.04□□□□□ -0.16
Tpm1P58771 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Tpm1P58771 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Tpm1P58771 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Tpm1P58771 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Tpm1P58771 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Tpm1P58771 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
Tpm1P58771 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.03□□□□□ -0.16
Tpm1P58771 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC14.03□□□□□ -0.16
Tpm1P58771 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC14.03□□□□□ -0.16
Tpm1P58771 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC14.03□□□□□ -0.16
Tpm1P58771 Gm15487-201ENSMUST00000122373 465 ntBASIC14.03□□□□□ -0.16
Tpm1P58771 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Gm24694-201ENSMUST00000180054 110 ntBASIC14.03□□□□□ -0.16
Tpm1P58771 Gm9061-201ENSMUST00000182707 1006 ntBASIC14.03□□□□□ -0.16
Tpm1P58771 Gm27663-201ENSMUST00000184839 110 ntBASIC14.03□□□□□ -0.16
Tpm1P58771 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC14.03□□□□□ -0.16
Tpm1P58771 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.03□□□□□ -0.16
Tpm1P58771 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Tpm1P58771 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
Tpm1P58771 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Tpm1P58771 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Tpm1P58771 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Tpm1P58771 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Tpm1P58771 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Tpm1P58771 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Tpm1P58771 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Tpm1P58771 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Tpm1P58771 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Tpm1P58771 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Tpm1P58771 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC14.02□□□□□ -0.16
Tpm1P58771 Gm7224-201ENSMUST00000121359 2066 ntBASIC14.02□□□□□ -0.16
Tpm1P58771 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC14.02□□□□□ -0.16
Tpm1P58771 Gm5780-201ENSMUST00000217774 1834 ntBASIC14.02□□□□□ -0.16
Tpm1P58771 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC14.02□□□□□ -0.16
Tpm1P58771 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Tpm1P58771 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Tpm1P58771 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Tpm1P58771 AC101945.2-201ENSMUST00000227886 1377 ntBASIC14.02□□□□□ -0.17
Tpm1P58771 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Tpm1P58771 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.02□□□□□ -0.17
Tpm1P58771 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Tpm1P58771 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Gm9630-201ENSMUST00000178304 885 ntBASIC14.02□□□□□ -0.17
Tpm1P58771 Gm19184-201ENSMUST00000196798 928 ntBASIC14.02□□□□□ -0.17
Tpm1P58771 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.02□□□□□ -0.17
Tpm1P58771 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC14.02□□□□□ -0.17
Tpm1P58771 Itm2b-204ENSMUST00000228637 783 ntBASIC14.02□□□□□ -0.17
Tpm1P58771 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC14.02□□□□□ -0.17
Tpm1P58771 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Tpm1P58771 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Tpm1P58771 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Tpm1P58771 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Tpm1P58771 AC160410.1-201ENSMUST00000219298 1972 ntBASIC14.02□□□□□ -0.17
Tpm1P58771 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Tpm1P58771 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Tpm1P58771 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Tpm1P58771 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Tpm1P58771 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Tpm1P58771 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Tpm1P58771 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Tpm1P58771 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Tpm1P58771 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms