Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
Traf1P39428 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Traf1P39428 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC14.59□□□□□ -0.07
Traf1P39428 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Traf1P39428 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC14.59□□□□□ -0.07
Traf1P39428 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Traf1P39428 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Traf1P39428 Gm38273-201ENSMUST00000194987 2382 ntBASIC14.59□□□□□ -0.07
Traf1P39428 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.59□□□□□ -0.07
Traf1P39428 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Traf1P39428 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Traf1P39428 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Traf1P39428 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Traf1P39428 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Traf1P39428 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.07
Traf1P39428 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.58□□□□□ -0.08
Traf1P39428 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Gm25214-201ENSMUST00000104573 129 ntBASIC14.58□□□□□ -0.08
Traf1P39428 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Traf1P39428 Gm13875-201ENSMUST00000120162 282 ntBASIC14.58□□□□□ -0.08
Traf1P39428 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
Traf1P39428 Gm5863-201ENSMUST00000121760 1008 ntBASIC14.58□□□□□ -0.08
Traf1P39428 Gm25043-201ENSMUST00000158604 212 ntBASIC14.58□□□□□ -0.08
Traf1P39428 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC14.58□□□□□ -0.08
Traf1P39428 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.58□□□□□ -0.08
Traf1P39428 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC14.58□□□□□ -0.08
Traf1P39428 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC14.58□□□□□ -0.08
Traf1P39428 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Traf1P39428 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Traf1P39428 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Traf1P39428 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Traf1P39428 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
Traf1P39428 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Traf1P39428 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC14.57□□□□□ -0.08
Traf1P39428 Gm12715-201ENSMUST00000121430 1128 ntBASIC14.57□□□□□ -0.08
Traf1P39428 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC14.57□□□□□ -0.08
Traf1P39428 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Gm16570-201ENSMUST00000161951 436 ntBASIC14.57□□□□□ -0.08
Traf1P39428 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Gm27046-201ENSMUST00000182160 463 ntBASIC14.57□□□□□ -0.08
Traf1P39428 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC14.57□□□□□ -0.08
Traf1P39428 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC14.57□□□□□ -0.08
Traf1P39428 Gm38317-201ENSMUST00000195564 343 ntBASIC14.57□□□□□ -0.08
Traf1P39428 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.57□□□□□ -0.08
Traf1P39428 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Traf1P39428 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.57□□□□□ -0.08
Traf1P39428 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Traf1P39428 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC14.56□□□□□ -0.08
Traf1P39428 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Traf1P39428 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Traf1P39428 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms