Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chmp6P0C0A3 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Gm6222-202ENSMUST00000182143 629 ntBASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.72□□□□□ -0.21
Chmp6P0C0A3 AC140406.1-201ENSMUST00000226481 465 ntBASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Zfp125-201ENSMUST00000079237 2488 ntBASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chmp6P0C0A3 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Gm23363-201ENSMUST00000175024 79 ntBASIC13.71□□□□□ -0.21
Chmp6P0C0A3 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Gm19184-201ENSMUST00000196798 928 ntBASIC13.71□□□□□ -0.21
Chmp6P0C0A3 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chmp6P0C0A3 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Paupar-201ENSMUST00000194826 3482 ntBASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chmp6P0C0A3 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chmp6P0C0A3 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms