Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Eloc-201ENSMUST00000115352 960 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm14723-201ENSMUST00000118686 215 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC9.95□□□□□ -0.82
Hoxd3P09027 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC9.95□□□□□ -0.82
Hoxd3P09027 A630023A22Rik-201ENSMUST00000178958 1277 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm26909-201ENSMUST00000181668 627 ntTSL 5 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm37489-201ENSMUST00000191883 159 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm43822-201ENSMUST00000200285 476 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm32025-201ENSMUST00000217960 307 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm9368-201ENSMUST00000219348 831 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm45930-201ENSMUST00000221330 292 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC9.95□□□□□ -0.82
Hoxd3P09027 AC154730.1-201ENSMUST00000227874 816 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Gm43052-201ENSMUST00000201451 1628 ntBASIC9.95□□□□□ -0.82
Hoxd3P09027 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC9.95□□□□□ -0.82
Hoxd3P09027 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
Hoxd3P09027 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Mypopos-202ENSMUST00000205975 2321 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC9.94□□□□□ -0.82
Hoxd3P09027 CT009713.10-201ENSMUST00000225013 1986 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm44775-201ENSMUST00000207266 1456 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm12502-201ENSMUST00000120197 444 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm22764-201ENSMUST00000158370 92 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm24548-201ENSMUST00000158650 108 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm8738-201ENSMUST00000172606 329 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Mospd4-201ENSMUST00000180618 576 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Mir8109-201ENSMUST00000184375 117 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm44364-201ENSMUST00000198368 141 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm43055-201ENSMUST00000198859 879 ntTSL 3 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm45425-201ENSMUST00000211727 618 ntTSL 2 BASIC9.94□□□□□ -0.82
Hoxd3P09027 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm7172-201ENSMUST00000218047 1152 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
Hoxd3P09027 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC9.94□□□□□ -0.82
Hoxd3P09027 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Hoxd3P09027 Gm37861-201ENSMUST00000193534 2869 ntBASIC9.94□□□□□ -0.82
Hoxd3P09027 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms