Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Gm25881-201ENSMUST00000157783 103 ntBASIC11.2□□□□□ -0.62
Col5a1O88207 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC11.2□□□□□ -0.62
Col5a1O88207 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 AC153954.1-201ENSMUST00000216959 255 ntBASIC11.2□□□□□ -0.62
Col5a1O88207 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Col5a1O88207 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col5a1O88207 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Col5a1O88207 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col5a1O88207 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC11.2□□□□□ -0.62
Col5a1O88207 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col5a1O88207 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col5a1O88207 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col5a1O88207 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Col5a1O88207 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Gm9387-201ENSMUST00000098624 1320 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 AC123619.2-202ENSMUST00000225097 1568 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm11451-201ENSMUST00000118946 630 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Gm14760-201ENSMUST00000121831 999 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm9022-201ENSMUST00000182482 992 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm807-202ENSMUST00000224929 408 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Col5a1O88207 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Ptprs-211ENSMUST00000223859 5588 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC11.19□□□□□ -0.62
Col5a1O88207 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm13668-201ENSMUST00000119237 1001 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC11.19□□□□□ -0.62
Col5a1O88207 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC11.19□□□□□ -0.62
Col5a1O88207 Mir6923-201ENSMUST00000184592 72 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Ighv4-2-201ENSMUST00000192975 362 ntBASIC11.19□□□□□ -0.62
Col5a1O88207 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col5a1O88207 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Col5a1O88207 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Col5a1O88207 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC11.18□□□□□ -0.62
Col5a1O88207 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Gm13937-201ENSMUST00000121000 988 ntBASIC11.18□□□□□ -0.62
Col5a1O88207 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC11.18□□□□□ -0.62
Col5a1O88207 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC11.18□□□□□ -0.62
Col5a1O88207 Gm4482-201ENSMUST00000200876 742 ntBASIC11.18□□□□□ -0.62
Col5a1O88207 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC11.18□□□□□ -0.62
Col5a1O88207 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC11.18□□□□□ -0.62
Col5a1O88207 Gm6722-201ENSMUST00000221586 390 ntBASIC11.18□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 125.9 ms