Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm37424-201ENSMUST00000191727 561 ntBASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.9□□□□□ -0.5
Trim3Q9R1R2 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Zkscan3-207ENSMUST00000223831 2101 ntBASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Trim3Q9R1R2 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Trim3Q9R1R2 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Gm8805-201ENSMUST00000117848 313 ntBASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Gm2231-201ENSMUST00000125661 612 ntBASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Gm8565-201ENSMUST00000183259 1014 ntBASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Dctn4-202ENSMUST00000223590 1530 ntBASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Gm38049-201ENSMUST00000195698 1372 ntBASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim3Q9R1R2 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Trav4d-2-201ENSMUST00000120914 335 ntBASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm7029-201ENSMUST00000173226 450 ntBASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm27514-201ENSMUST00000183692 110 ntBASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms