Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Gm18935-201ENSMUST00000212692 664 ntBASIC14.13□□□□□ -0.15
Smc1aQ9CU62 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 CT025678.1-201ENSMUST00000214795 2972 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm11793-201ENSMUST00000120433 981 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm25927-201ENSMUST00000175058 117 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Tyms-ps-201ENSMUST00000219550 915 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 AC173210.1-201ENSMUST00000222341 1131 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm10146-201ENSMUST00000072739 309 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gm3695-201ENSMUST00000087222 1009 ntBASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Smc1aQ9CU62 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Gm38241-201ENSMUST00000192641 898 ntBASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Gm9368-201ENSMUST00000219348 831 ntBASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms