Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Nkx6-1Q99MA9 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gm12291-201ENSMUST00000121627 311 ntBASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 AY036118-201ENSMUST00000200021 923 ntBASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gm19187-201ENSMUST00000206781 892 ntBASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gm5369-201ENSMUST00000217499 588 ntBASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Mir339-201ENSMUST00000083659 96 ntBASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx6-1Q99MA9 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Gm5778-201ENSMUST00000171003 1072 ntBASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 AC159205.5-202ENSMUST00000224849 386 ntBASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx6-1Q99MA9 Gm43823-201ENSMUST00000197391 1808 ntBASIC11.83□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms