Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim47Q8C0E3 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm14381-201ENSMUST00000122105 414 ntBASIC13.98□□□□□ -0.17
Trim47Q8C0E3 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm27243-201ENSMUST00000183964 521 ntBASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm37201-201ENSMUST00000191845 523 ntBASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm39404-201ENSMUST00000216350 313 ntBASIC13.98□□□□□ -0.17
Trim47Q8C0E3 AC154248.2-201ENSMUST00000221964 659 ntTSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Olfr293-201ENSMUST00000081474 1011 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Trim47Q8C0E3 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Gm31256-201ENSMUST00000194705 506 ntBASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim47Q8C0E3 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim47Q8C0E3 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Trim47Q8C0E3 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim47Q8C0E3 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
Trim47Q8C0E3 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim47Q8C0E3 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim47Q8C0E3 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms