Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm23935-201ENSMUST00000102303 57 ntBASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm24270-201ENSMUST00000102326 57 ntBASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm24245-201ENSMUST00000157318 57 ntBASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm22175-201ENSMUST00000175007 78 ntBASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm27618-201ENSMUST00000183671 60 ntBASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm37277-201ENSMUST00000194052 1111 ntBASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Rnf220Q6PDX6 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Rnf220Q6PDX6 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm13135-201ENSMUST00000117628 3121 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm14701-201ENSMUST00000117156 348 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm27772-201ENSMUST00000184900 187 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm7063-201ENSMUST00000186840 981 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm6888-201ENSMUST00000221983 706 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 AC154621.1-201ENSMUST00000226155 1119 ntBASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC11.95□□□□□ -0.5
Rnf220Q6PDX6 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Rnf220Q6PDX6 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms