Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Gm27390-201ENSMUST00000184516 176 ntBASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Col28a1Q2UY11 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Mir686-201ENSMUST00000102174 109 ntBASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gm13226-201ENSMUST00000117838 404 ntBASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gm11978-201ENSMUST00000122315 466 ntBASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col28a1Q2UY11 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Col28a1Q2UY11 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms