Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Gm22133-201ENSMUST00000102082 109 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Sox9Q04887 Gm13600-201ENSMUST00000117949 744 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Gm14921-201ENSMUST00000118643 908 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Gm20392-201ENSMUST00000173047 701 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Mir7076-201ENSMUST00000183519 74 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC13.02□□□□□ -0.33
Sox9Q04887 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC13.02□□□□□ -0.33
Sox9Q04887 Gm17827-201ENSMUST00000211825 742 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Gm2517-201ENSMUST00000215651 348 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.02□□□□□ -0.33
Sox9Q04887 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.02□□□□□ -0.33
Sox9Q04887 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC13.02□□□□□ -0.33
Sox9Q04887 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Sox9Q04887 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC13.02□□□□□ -0.33
Sox9Q04887 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sox9Q04887 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sox9Q04887 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Sox9Q04887 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Gm24891-201ENSMUST00000104391 136 ntBASIC13.01□□□□□ -0.33
Sox9Q04887 Gm11801-201ENSMUST00000117807 746 ntBASIC13.01□□□□□ -0.33
Sox9Q04887 Gm12291-201ENSMUST00000121627 311 ntBASIC13.01□□□□□ -0.33
Sox9Q04887 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Gm19091-201ENSMUST00000208120 978 ntBASIC13.01□□□□□ -0.33
Sox9Q04887 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC13.01□□□□□ -0.33
Sox9Q04887 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC13.01□□□□□ -0.33
Sox9Q04887 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Sox9Q04887 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
Sox9Q04887 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sox9Q04887 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sox9Q04887 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Sox9Q04887 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sox9Q04887 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
Sox9Q04887 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13□□□□□ -0.33
Sox9Q04887 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Sox9Q04887 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Gm12516-201ENSMUST00000120819 385 ntBASIC13□□□□□ -0.33
Sox9Q04887 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC13□□□□□ -0.33
Sox9Q04887 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
Sox9Q04887 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13□□□□□ -0.33
Sox9Q04887 Gm42518-201ENSMUST00000196277 938 ntBASIC13□□□□□ -0.33
Sox9Q04887 Gm7902-201ENSMUST00000198842 947 ntBASIC13□□□□□ -0.33
Sox9Q04887 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
Sox9Q04887 AC122408.1-201ENSMUST00000218949 218 ntBASIC13□□□□□ -0.33
Sox9Q04887 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13□□□□□ -0.33
Sox9Q04887 AC125209.1-201ENSMUST00000225812 766 ntBASIC13□□□□□ -0.33
Sox9Q04887 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13□□□□□ -0.33
Sox9Q04887 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Sox9Q04887 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms