Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Rfx1P48377 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Gm7558-201ENSMUST00000193221 1165 ntBASIC15.04■□□□□ -0
Rfx1P48377 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC15.04■□□□□ -0
Rfx1P48377 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC15.04■□□□□ -0
Rfx1P48377 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Rfx1P48377 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Rfx1P48377 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC15.03■□□□□ -0
Rfx1P48377 Gm15429-201ENSMUST00000151268 798 ntBASIC15.03■□□□□ -0
Rfx1P48377 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Rfx1P48377 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC15.03■□□□□ -0
Rfx1P48377 Gm5276-201ENSMUST00000196683 1047 ntBASIC15.03■□□□□ -0
Rfx1P48377 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.03■□□□□ -0
Rfx1P48377 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC15.03■□□□□ -0
Rfx1P48377 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Gm5422-201ENSMUST00000050717 2721 ntBASIC15.03■□□□□ -0
Rfx1P48377 AC122860.2-201ENSMUST00000217967 2671 ntBASIC15.03■□□□□ -0
Rfx1P48377 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Rfx1P48377 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Rfx1P48377 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
Rfx1P48377 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Rfx1P48377 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC15.02■□□□□ -0
Rfx1P48377 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC15.02■□□□□ -0
Rfx1P48377 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Rfx1P48377 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Rfx1P48377 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Rfx1P48377 Gm19220-201ENSMUST00000222682 803 ntBASIC15.02■□□□□ -0
Rfx1P48377 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC15.02■□□□□ -0
Rfx1P48377 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
Rfx1P48377 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Rfx1P48377 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC15.02■□□□□ -0
Rfx1P48377 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
Rfx1P48377 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Rfx1P48377 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Rfx1P48377 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Rfx1P48377 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Rfx1P48377 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Rfx1P48377 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Rfx1P48377 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Rfx1P48377 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Rfx1P48377 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC15.02□□□□□ -0.01
Rfx1P48377 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Rfx1P48377 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.01□□□□□ -0.01
Rfx1P48377 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Rfx1P48377 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Rfx1P48377 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Rfx1P48377 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Rfx1P48377 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms