Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm13050-201ENSMUST00000122149 1345 ntBASIC13.63□□□□□ -0.23
RaraP11416 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
RaraP11416 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Paupar-201ENSMUST00000194826 3482 ntBASIC13.62□□□□□ -0.23
RaraP11416 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 AC156031.2-201ENSMUST00000213107 3310 ntBASIC13.62□□□□□ -0.23
RaraP11416 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC13.62□□□□□ -0.23
RaraP11416 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC13.62□□□□□ -0.23
RaraP11416 Gm27331-201ENSMUST00000183705 60 ntBASIC13.62□□□□□ -0.23
RaraP11416 Gm27892-201ENSMUST00000185017 106 ntBASIC13.62□□□□□ -0.23
RaraP11416 Gm38092-201ENSMUST00000195600 653 ntBASIC13.62□□□□□ -0.23
RaraP11416 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Gm19163-201ENSMUST00000223313 780 ntBASIC13.62□□□□□ -0.23
RaraP11416 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Gm5356-201ENSMUST00000093326 615 ntBASIC13.62□□□□□ -0.23
RaraP11416 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
RaraP11416 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
RaraP11416 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RaraP11416 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.62□□□□□ -0.23
RaraP11416 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.62□□□□□ -0.23
RaraP11416 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RaraP11416 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.61□□□□□ -0.23
RaraP11416 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
RaraP11416 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.61□□□□□ -0.23
RaraP11416 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC13.61□□□□□ -0.23
RaraP11416 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
RaraP11416 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.61□□□□□ -0.23
RaraP11416 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.61□□□□□ -0.23
RaraP11416 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.61□□□□□ -0.23
RaraP11416 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC13.61□□□□□ -0.23
RaraP11416 Gm45059-201ENSMUST00000205558 1077 ntBASIC13.61□□□□□ -0.23
RaraP11416 Gm4768-201ENSMUST00000206199 686 ntBASIC13.61□□□□□ -0.23
RaraP11416 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
RaraP11416 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
RaraP11416 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
RaraP11416 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC13.61□□□□□ -0.23
RaraP11416 AC157950.1-201ENSMUST00000217561 2168 ntBASIC13.61□□□□□ -0.23
RaraP11416 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RaraP11416 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Gm44260-201ENSMUST00000204946 2094 ntBASIC13.6□□□□□ -0.23
RaraP11416 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RaraP11416 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.6□□□□□ -0.23
RaraP11416 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RaraP11416 Gm24231-201ENSMUST00000104315 133 ntBASIC13.6□□□□□ -0.23
RaraP11416 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
RaraP11416 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC13.6□□□□□ -0.23
RaraP11416 Gm11814-201ENSMUST00000119515 929 ntBASIC13.6□□□□□ -0.23
RaraP11416 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.6□□□□□ -0.23
RaraP11416 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Gm7029-201ENSMUST00000173226 450 ntBASIC13.6□□□□□ -0.23
RaraP11416 Gm27390-201ENSMUST00000184516 176 ntBASIC13.6□□□□□ -0.23
RaraP11416 Gm29705-201ENSMUST00000212598 474 ntBASIC13.6□□□□□ -0.23
RaraP11416 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RaraP11416 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms