Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC12.04□□□□□ -0.48
Lire1P11260 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Rassf8-202ENSMUST00000058538 1131 ntBASIC12.04□□□□□ -0.48
Lire1P11260 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.04□□□□□ -0.48
Lire1P11260 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Lire1P11260 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Gm36987-201ENSMUST00000194704 2979 ntBASIC12.03□□□□□ -0.48
Lire1P11260 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Lire1P11260 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC12.03□□□□□ -0.48
Lire1P11260 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.03□□□□□ -0.48
Lire1P11260 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Lire1P11260 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.03□□□□□ -0.48
Lire1P11260 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.03□□□□□ -0.48
Lire1P11260 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC12.03□□□□□ -0.48
Lire1P11260 Gm8801-201ENSMUST00000173255 1064 ntBASIC12.03□□□□□ -0.48
Lire1P11260 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.03□□□□□ -0.48
Lire1P11260 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.03□□□□□ -0.48
Lire1P11260 AC126253.1-201ENSMUST00000227974 824 ntBASIC12.03□□□□□ -0.48
Lire1P11260 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 H2-M9-202ENSMUST00000087167 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Lire1P11260 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC12.03□□□□□ -0.48
Lire1P11260 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Lire1P11260 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Nfyc-204ENSMUST00000120779 2006 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Lire1P11260 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Lire1P11260 Gm7553-201ENSMUST00000185805 1426 ntBASIC12.03□□□□□ -0.48
Lire1P11260 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.03□□□□□ -0.48
Lire1P11260 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.02□□□□□ -0.48
Lire1P11260 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Lire1P11260 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Lire1P11260 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lire1P11260 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lire1P11260 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lire1P11260 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lire1P11260 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lire1P11260 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Lire1P11260 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.02□□□□□ -0.49
Lire1P11260 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Lire1P11260 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.02□□□□□ -0.49
Lire1P11260 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.02□□□□□ -0.49
Lire1P11260 Gm38671-201ENSMUST00000200573 130 ntBASIC12.02□□□□□ -0.49
Lire1P11260 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.02□□□□□ -0.49
Lire1P11260 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.02□□□□□ -0.49
Lire1P11260 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.02□□□□□ -0.49
Lire1P11260 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.02□□□□□ -0.49
Lire1P11260 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Lire1P11260 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Lire1P11260 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Lire1P11260 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Lire1P11260 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms