Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col3a1P08121 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.88□□□□□ -0.03
Col3a1P08121 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Col3a1P08121 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.88□□□□□ -0.03
Col3a1P08121 Gm5525-201ENSMUST00000190438 1312 ntBASIC14.88□□□□□ -0.03
Col3a1P08121 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col3a1P08121 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Gm26286-201ENSMUST00000104166 134 ntBASIC14.88□□□□□ -0.03
Col3a1P08121 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col3a1P08121 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC14.88□□□□□ -0.03
Col3a1P08121 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC14.88□□□□□ -0.03
Col3a1P08121 Gm12196-201ENSMUST00000120954 262 ntBASIC14.88□□□□□ -0.03
Col3a1P08121 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC14.88□□□□□ -0.03
Col3a1P08121 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Gm44100-201ENSMUST00000204329 436 ntBASIC14.88□□□□□ -0.03
Col3a1P08121 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col3a1P08121 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Col3a1P08121 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Col3a1P08121 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Col3a1P08121 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Col3a1P08121 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Gm23596-201ENSMUST00000104304 132 ntBASIC14.87□□□□□ -0.03
Col3a1P08121 Gm9550-201ENSMUST00000161130 862 ntBASIC14.87□□□□□ -0.03
Col3a1P08121 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC14.87□□□□□ -0.03
Col3a1P08121 Spcs1-203ENSMUST00000226374 592 ntBASIC14.87□□□□□ -0.03
Col3a1P08121 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Col3a1P08121 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Col3a1P08121 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col3a1P08121 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.87□□□□□ -0.03
Col3a1P08121 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC14.87□□□□□ -0.03
Col3a1P08121 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC14.86□□□□□ -0.03
Col3a1P08121 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Col3a1P08121 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.86□□□□□ -0.03
Col3a1P08121 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.86□□□□□ -0.03
Col3a1P08121 AC154671.1-201ENSMUST00000228617 1578 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Col3a1P08121 Gm11509-201ENSMUST00000117358 325 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Gm7851-201ENSMUST00000117574 323 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Gm7722-201ENSMUST00000120646 741 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Gm23699-201ENSMUST00000158835 135 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC14.86□□□□□ -0.03
Col3a1P08121 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Gm19353-201ENSMUST00000184561 445 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Gm4482-201ENSMUST00000200876 742 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC14.86□□□□□ -0.03
Col3a1P08121 Gm44545-201ENSMUST00000208262 746 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC14.86□□□□□ -0.03
Col3a1P08121 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Gm45770-201ENSMUST00000212105 616 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms