Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Gm9200-201ENSMUST00000118513 1354 ntBASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trim3Q9R1R2 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Nudt18-202ENSMUST00000228554 3619 ntBASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm12957-201ENSMUST00000117835 377 ntBASIC11.91□□□□□ -0.5
Trim3Q9R1R2 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm27682-201ENSMUST00000183930 110 ntBASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm9728-201ENSMUST00000200197 1055 ntBASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm6458-201ENSMUST00000211573 635 ntBASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm10146-201ENSMUST00000072739 309 ntBASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Gm10339-203ENSMUST00000225409 1671 ntBASIC11.91□□□□□ -0.5
Trim3Q9R1R2 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Gm12742-201ENSMUST00000117326 410 ntBASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Gm1335-201ENSMUST00000121653 386 ntBASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Gm26927-201ENSMUST00000182385 965 ntBASIC11.9□□□□□ -0.5
Trim3Q9R1R2 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms