Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.32□□□□□ -0.44
Msh4Q99MT2 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm5187-201ENSMUST00000117317 991 ntBASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm11637-201ENSMUST00000120601 592 ntBASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm27572-201ENSMUST00000183702 255 ntBASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Gm8706-201ENSMUST00000197372 1491 ntBASIC12.32□□□□□ -0.44
Msh4Q99MT2 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Msh4Q99MT2 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.31□□□□□ -0.44
Msh4Q99MT2 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Gm26185-201ENSMUST00000157692 266 ntBASIC12.31□□□□□ -0.44
Msh4Q99MT2 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Msh4Q99MT2 AC101945.2-201ENSMUST00000227886 1377 ntBASIC12.3□□□□□ -0.44
Msh4Q99MT2 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Gm42693-201ENSMUST00000196779 631 ntBASIC12.3□□□□□ -0.44
Msh4Q99MT2 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.3□□□□□ -0.44
Msh4Q99MT2 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Msh4Q99MT2 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms