Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Usp11Q99K46 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Usp11Q99K46 Gm45684-201ENSMUST00000210244 1571 ntBASIC13.32□□□□□ -0.28
Usp11Q99K46 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Gm26684-202ENSMUST00000228229 8257 ntBASIC13.32□□□□□ -0.28
Usp11Q99K46 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC13.32□□□□□ -0.28
Usp11Q99K46 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Gm2824-203ENSMUST00000226189 1228 ntBASIC13.32□□□□□ -0.28
Usp11Q99K46 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC13.32□□□□□ -0.28
Usp11Q99K46 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Usp11Q99K46 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm13123-201ENSMUST00000122173 492 ntBASIC13.31□□□□□ -0.28
Usp11Q99K46 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm8835-201ENSMUST00000173096 1169 ntBASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Usp11Q99K46 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm43075-201ENSMUST00000198613 3905 ntBASIC13.31□□□□□ -0.28
Usp11Q99K46 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.3□□□□□ -0.28
Usp11Q99K46 Gm15222-202ENSMUST00000228667 1726 ntBASIC13.3□□□□□ -0.28
Usp11Q99K46 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Usp11Q99K46 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Usp11Q99K46 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.3□□□□□ -0.28
Usp11Q99K46 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Usp11Q99K46 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Usp11Q99K46 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 58.6 ms