Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Gm3287-205ENSMUST00000228893 1332 ntBASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Gm12742-201ENSMUST00000117326 410 ntBASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Gm9431-201ENSMUST00000119765 1051 ntBASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Gm45784-201ENSMUST00000188360 142 ntBASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 AC126253.1-201ENSMUST00000227974 824 ntBASIC14.12□□□□□ -0.15
Usp49Q6P9L4 n-R5s195-201ENSMUST00000082891 119 ntBASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 AC131068.2-201ENSMUST00000226175 1453 ntBASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp49Q6P9L4 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm22018-201ENSMUST00000104357 131 ntBASIC14.11□□□□□ -0.15
Usp49Q6P9L4 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm11597-201ENSMUST00000121423 964 ntBASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm45484-201ENSMUST00000210310 1141 ntBASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm37472-201ENSMUST00000192342 4052 ntBASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Usp49Q6P9L4 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC14.1□□□□□ -0.15
Usp49Q6P9L4 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms