Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Mir1247-201ENSMUST00000116706 82 ntBASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Gm16177-201ENSMUST00000120728 718 ntBASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Sh3rf1Q69ZI1 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm7553-201ENSMUST00000185805 1426 ntBASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm5187-201ENSMUST00000117317 991 ntBASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm43179-201ENSMUST00000198797 275 ntBASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm29705-201ENSMUST00000212598 474 ntBASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Sh3rf1Q69ZI1 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Gm23931-201ENSMUST00000103842 109 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Gm27331-201ENSMUST00000183705 60 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Gm45880-201ENSMUST00000213041 853 ntBASIC12.81□□□□□ -0.36
Sh3rf1Q69ZI1 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms