Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Mir686-201ENSMUST00000102174 109 ntBASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC11.85□□□□□ -0.51
Trim40Q3UWA4 AC073947.2-201ENSMUST00000215888 1130 ntBASIC11.85□□□□□ -0.51
Trim40Q3UWA4 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trim40Q3UWA4 Gm43858-201ENSMUST00000199418 1778 ntBASIC11.84□□□□□ -0.51
Trim40Q3UWA4 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gm35960-201ENSMUST00000202712 767 ntBASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 AC139580.1-202ENSMUST00000223574 928 ntBASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gm20445-201ENSMUST00000061905 565 ntBASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 AC154639.1-201ENSMUST00000224393 2849 ntBASIC11.84□□□□□ -0.51
Trim40Q3UWA4 AC164426.2-201ENSMUST00000225993 2492 ntBASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Trim40Q3UWA4 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.51
Trim40Q3UWA4 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Trim40Q3UWA4 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Trim40Q3UWA4 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.83□□□□□ -0.51
Trim40Q3UWA4 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC11.83□□□□□ -0.51
Trim40Q3UWA4 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Trim40Q3UWA4 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Trim40Q3UWA4 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 114.2 ms