Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Limch1Q3UH68 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm12241-201ENSMUST00000118330 726 ntBASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm26185-201ENSMUST00000157692 266 ntBASIC14.87□□□□□ -0.03
Limch1Q3UH68 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm17208-201ENSMUST00000168388 535 ntBASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm29396-201ENSMUST00000185659 716 ntBASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm37042-201ENSMUST00000193816 581 ntBASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm45865-201ENSMUST00000211815 945 ntBASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.87□□□□□ -0.03
Limch1Q3UH68 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Limch1Q3UH68 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm44772-201ENSMUST00000207623 1191 ntBASIC14.86□□□□□ -0.03
Limch1Q3UH68 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.86□□□□□ -0.03
Limch1Q3UH68 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm43579-201ENSMUST00000202387 1307 ntBASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.86□□□□□ -0.03
Limch1Q3UH68 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.86□□□□□ -0.03
Limch1Q3UH68 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms