Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Gm12196-201ENSMUST00000120954 262 ntBASIC13.04□□□□□ -0.32
Sox9Q04887 Mup-ps26-201ENSMUST00000121751 202 ntBASIC13.04□□□□□ -0.32
Sox9Q04887 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox9Q04887 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Sox9Q04887 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.04□□□□□ -0.32
Sox9Q04887 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox9Q04887 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox9Q04887 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox9Q04887 Mir7677-201ENSMUST00000184226 67 ntBASIC13.04□□□□□ -0.32
Sox9Q04887 Gm42682-201ENSMUST00000198349 1265 ntBASIC13.04□□□□□ -0.32
Sox9Q04887 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 AC159376.1-201ENSMUST00000218504 630 ntBASIC13.04□□□□□ -0.32
Sox9Q04887 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox9Q04887 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Sox9Q04887 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC13.04□□□□□ -0.32
Sox9Q04887 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Sox9Q04887 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Sox9Q04887 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Gm9129-201ENSMUST00000218173 1689 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Sox9Q04887 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC13.03□□□□□ -0.32
Sox9Q04887 Gm11246-201ENSMUST00000120880 345 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.03□□□□□ -0.32
Sox9Q04887 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC13.03□□□□□ -0.32
Sox9Q04887 Gm23218-201ENSMUST00000158124 276 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Gm10774-201ENSMUST00000188689 204 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Gm5733-201ENSMUST00000190232 939 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC13.03□□□□□ -0.32
Sox9Q04887 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Gm39404-201ENSMUST00000216350 313 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Gm270-201ENSMUST00000223010 976 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 AC171241.1-201ENSMUST00000228144 1166 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Snora73b-201ENSMUST00000083419 205 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Sox9Q04887 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.03□□□□□ -0.32
Sox9Q04887 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Sox9Q04887 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sox9Q04887 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Sox9Q04887 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC13.02□□□□□ -0.32
Sox9Q04887 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sox9Q04887 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms