Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gm7857-201ENSMUST00000117957 358 ntBASIC10.93□□□□□ -0.66
Nkx3-1P97436 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gm8018-201ENSMUST00000173536 789 ntBASIC10.93□□□□□ -0.66
Nkx3-1P97436 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 AC154222.2-201ENSMUST00000225848 607 ntBASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gm10312-201ENSMUST00000078515 489 ntBASIC10.93□□□□□ -0.66
Nkx3-1P97436 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Nkx3-1P97436 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm22902-201ENSMUST00000158488 302 ntBASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm16296-201ENSMUST00000159905 325 ntBASIC10.92□□□□□ -0.66
Nkx3-1P97436 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm8385-201ENSMUST00000058999 643 ntBASIC10.92□□□□□ -0.66
Nkx3-1P97436 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC10.92□□□□□ -0.66
Nkx3-1P97436 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Nkx3-1P97436 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms