Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC10.25□□□□□ -0.77
Cdx1P18111 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC10.25□□□□□ -0.77
Cdx1P18111 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC10.25□□□□□ -0.77
Cdx1P18111 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cdx1P18111 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdx1P18111 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC10.25□□□□□ -0.77
Cdx1P18111 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdx1P18111 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cdx1P18111 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC10.24□□□□□ -0.77
Cdx1P18111 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Cdx1P18111 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC10.24□□□□□ -0.77
Cdx1P18111 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Cdx1P18111 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Gm15460-201ENSMUST00000118147 391 ntBASIC10.24□□□□□ -0.77
Cdx1P18111 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC10.24□□□□□ -0.77
Cdx1P18111 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC10.24□□□□□ -0.77
Cdx1P18111 Gm44719-201ENSMUST00000206404 149 ntBASIC10.24□□□□□ -0.77
Cdx1P18111 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Gm25857-201ENSMUST00000082788 129 ntBASIC10.24□□□□□ -0.77
Cdx1P18111 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 Gm37368-201ENSMUST00000193173 3212 ntBASIC10.24□□□□□ -0.77
Cdx1P18111 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdx1P18111 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdx1P18111 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
Cdx1P18111 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cdx1P18111 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Cdx1P18111 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC10.23□□□□□ -0.77
Cdx1P18111 Gm15806-201ENSMUST00000120696 955 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 Gm12138-201ENSMUST00000122180 951 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cdx1P18111 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
Cdx1P18111 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 AC153872.1-201ENSMUST00000199539 128 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC10.23□□□□□ -0.77
Cdx1P18111 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms