Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm6938-201ENSMUST00000123014 771 ntTSL 3 BASIC12.14□□□□□ -0.47
Msx1P13297 Gm2231-201ENSMUST00000125661 612 ntBASIC12.14□□□□□ -0.47
Msx1P13297 Gm11491-201ENSMUST00000129441 1118 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Gm12205-201ENSMUST00000133940 575 ntTSL 5 BASIC12.14□□□□□ -0.47
Msx1P13297 Gm15940-201ENSMUST00000156011 817 ntTSL 3 BASIC12.14□□□□□ -0.47
Msx1P13297 Gm17983-201ENSMUST00000190766 594 ntBASIC12.14□□□□□ -0.47
Msx1P13297 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.14□□□□□ -0.47
Msx1P13297 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.14□□□□□ -0.47
Msx1P13297 AC135669.1-202ENSMUST00000216742 540 ntBASIC12.14□□□□□ -0.47
Msx1P13297 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC12.14□□□□□ -0.47
Msx1P13297 CT572999.1-201ENSMUST00000220315 1260 ntBASIC12.14□□□□□ -0.47
Msx1P13297 Pinx1-201ENSMUST00000022528 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Msx1P13297 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC12.14□□□□□ -0.47
Msx1P13297 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.14□□□□□ -0.47
Msx1P13297 Gm39214-201ENSMUST00000210912 1542 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Olfr1171-ps1-202ENSMUST00000150178 1398 ntTSL 3 BASIC12.14□□□□□ -0.47
Msx1P13297 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Msx1P13297 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.14□□□□□ -0.47
Msx1P13297 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Msx1P13297 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Gm5385-201ENSMUST00000118988 1559 ntBASIC12.13□□□□□ -0.47
Msx1P13297 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Msx1P13297 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.13□□□□□ -0.47
Msx1P13297 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Msx1P13297 Gm13059-201ENSMUST00000119881 398 ntBASIC12.13□□□□□ -0.47
Msx1P13297 Gm11591-201ENSMUST00000120063 702 ntBASIC12.13□□□□□ -0.47
Msx1P13297 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Gm16505-201ENSMUST00000179981 232 ntBASIC12.13□□□□□ -0.47
Msx1P13297 Gm27341-201ENSMUST00000183570 106 ntBASIC12.13□□□□□ -0.47
Msx1P13297 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC12.13□□□□□ -0.47
Msx1P13297 Gm44554-201ENSMUST00000208738 147 ntBASIC12.13□□□□□ -0.47
Msx1P13297 AC153361.2-203ENSMUST00000218083 661 ntTSL 3 BASIC12.13□□□□□ -0.47
Msx1P13297 AC153512.2-201ENSMUST00000220363 1273 ntTSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Msx1P13297 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Tas2r113-201ENSMUST00000079035 930 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Msx1P13297 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Gm3756-201ENSMUST00000169182 1355 ntBASIC12.13□□□□□ -0.47
Msx1P13297 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Msx1P13297 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Msx1P13297 Il10-201ENSMUST00000016673 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Msx1P13297 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Olfr362-201ENSMUST00000100144 954 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Msx1P13297 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.12□□□□□ -0.47
Msx1P13297 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Msx1P13297 Gm16202-201ENSMUST00000117532 544 ntBASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms