Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Gm44397-201ENSMUST00000195950 113 ntBASIC12.06□□□□□ -0.48
Lire1P11260 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gm6091-201ENSMUST00000098307 165 ntBASIC12.06□□□□□ -0.48
Lire1P11260 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gm37368-201ENSMUST00000193173 3212 ntBASIC12.06□□□□□ -0.48
Lire1P11260 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Lire1P11260 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Lire1P11260 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Gm10729-202ENSMUST00000193403 1375 ntBASIC12.05□□□□□ -0.48
Lire1P11260 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Lire1P11260 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.05□□□□□ -0.48
Lire1P11260 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Mir1247-201ENSMUST00000116706 82 ntBASIC12.05□□□□□ -0.48
Lire1P11260 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.05□□□□□ -0.48
Lire1P11260 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.05□□□□□ -0.48
Lire1P11260 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.05□□□□□ -0.48
Lire1P11260 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.05□□□□□ -0.48
Lire1P11260 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.05□□□□□ -0.48
Lire1P11260 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Gm37133-201ENSMUST00000192705 1922 ntBASIC12.05□□□□□ -0.48
Lire1P11260 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.05□□□□□ -0.48
Lire1P11260 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.05□□□□□ -0.48
Lire1P11260 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Lire1P11260 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Gm37447-201ENSMUST00000195625 2928 ntBASIC12.04□□□□□ -0.48
Lire1P11260 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Lire1P11260 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Lire1P11260 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Lire1P11260 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Lire1P11260 Gm13612-201ENSMUST00000119276 390 ntBASIC12.04□□□□□ -0.48
Lire1P11260 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
Lire1P11260 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.04□□□□□ -0.48
Lire1P11260 Gm38223-201ENSMUST00000194484 695 ntBASIC12.04□□□□□ -0.48
Lire1P11260 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms