Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Crry-ps-201ENSMUST00000079090 1309 ntBASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm14130-201ENSMUST00000118417 987 ntBASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm8885-201ENSMUST00000189382 598 ntBASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm18212-201ENSMUST00000211678 889 ntBASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm4864-201ENSMUST00000219894 1461 ntBASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gm44401-201ENSMUST00000204462 2375 ntBASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Gm4760-201ENSMUST00000119663 1030 ntBASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trim54Q9ERP3 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.71□□□□□ -0.21
Trim54Q9ERP3 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim54Q9ERP3 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gm11439-201ENSMUST00000118598 409 ntBASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gm14277-201ENSMUST00000121195 360 ntBASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gm8018-201ENSMUST00000173536 789 ntBASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gm25700-201ENSMUST00000177693 110 ntBASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gstp-ps-201ENSMUST00000195526 631 ntBASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gm44262-201ENSMUST00000204969 372 ntBASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim54Q9ERP3 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms