Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Lima1Q9ERG0 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Gm5687-201ENSMUST00000118252 640 ntBASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Lima1Q9ERG0 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Gm2495-201ENSMUST00000191160 466 ntBASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lima1Q9ERG0 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.47□□□□□ -0.41
Lima1Q9ERG0 Gm27701-201ENSMUST00000184498 110 ntBASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms