Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm45930-201ENSMUST00000221330 292 ntBASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm13342-201ENSMUST00000121055 207 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm16379-201ENSMUST00000161469 348 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Mir8109-201ENSMUST00000184375 117 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm8762-201ENSMUST00000193486 339 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm43118-201ENSMUST00000199149 775 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm9368-201ENSMUST00000219348 831 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 CT009713.10-202ENSMUST00000225734 696 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Snora73a-201ENSMUST00000082453 205 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdc40Q9DC48 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Cdc40Q9DC48 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdc40Q9DC48 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Cdc40Q9DC48 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Cdc40Q9DC48 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdc40Q9DC48 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdc40Q9DC48 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Gm11793-201ENSMUST00000120433 981 ntBASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Gm13350-201ENSMUST00000120519 479 ntBASIC11.77□□□□□ -0.53
Cdc40Q9DC48 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Gm6334-201ENSMUST00000207083 228 ntBASIC11.77□□□□□ -0.53
Cdc40Q9DC48 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Gm9257-201ENSMUST00000221254 232 ntBASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Gm7114-201ENSMUST00000190159 1789 ntBASIC11.77□□□□□ -0.53
Cdc40Q9DC48 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdc40Q9DC48 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdc40Q9DC48 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms