Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm12749-201ENSMUST00000122138 1159 ntBASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm26185-201ENSMUST00000157692 266 ntBASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm16379-201ENSMUST00000161469 348 ntBASIC14.2□□□□□ -0.14
Ushbp1Q8R370 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm17208-201ENSMUST00000168388 535 ntBASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm6222-202ENSMUST00000182143 629 ntBASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm8762-201ENSMUST00000193486 339 ntBASIC14.2□□□□□ -0.14
Ushbp1Q8R370 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm11658-201ENSMUST00000120913 1008 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm14381-201ENSMUST00000122105 414 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm17376-201ENSMUST00000166016 84 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm2467-201ENSMUST00000182266 1010 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm6981-201ENSMUST00000182467 1008 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm6621-201ENSMUST00000193251 772 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm8099-201ENSMUST00000200510 742 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 AC132384.14-201ENSMUST00000219346 1147 ntBASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ushbp1Q8R370 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gm22323-201ENSMUST00000103832 109 ntBASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gm24255-201ENSMUST00000104481 128 ntBASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gm6023-201ENSMUST00000118217 606 ntBASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 n-R5s77-201ENSMUST00000083757 119 ntBASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ushbp1Q8R370 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 143 ms