Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm37720-201ENSMUST00000195497 1241 ntBASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Gm43377-201ENSMUST00000201640 455 ntBASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Gm17872-201ENSMUST00000222550 532 ntBASIC14.04□□□□□ -0.16
Trim47Q8C0E3 AC102523.2-201ENSMUST00000227813 983 ntBASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim47Q8C0E3 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Gm11222-201ENSMUST00000119005 738 ntBASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Gm5597-201ENSMUST00000182353 1193 ntBASIC14.03□□□□□ -0.16
Trim47Q8C0E3 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 AC166095.1-201ENSMUST00000223731 1241 ntBASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Gm43858-201ENSMUST00000199418 1778 ntBASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim47Q8C0E3 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trim47Q8C0E3 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm13315-201ENSMUST00000120376 991 ntBASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm14726-201ENSMUST00000120623 896 ntBASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm26956-201ENSMUST00000182176 986 ntBASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 AC113031.8-201ENSMUST00000227856 631 ntBASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Trim47Q8C0E3 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms