Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm12286-201ENSMUST00000119246 1002 ntBASIC17.78■□□□□ 0.44
Usp47Q8BY87 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC17.78■□□□□ 0.44
Usp47Q8BY87 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC17.78■□□□□ 0.44
Usp47Q8BY87 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC17.78■□□□□ 0.44
Usp47Q8BY87 Gm19187-201ENSMUST00000206781 892 ntBASIC17.78■□□□□ 0.44
Usp47Q8BY87 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC17.78■□□□□ 0.44
Usp47Q8BY87 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC17.78■□□□□ 0.44
Usp47Q8BY87 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp47Q8BY87 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Usp47Q8BY87 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Gm38385-201ENSMUST00000194454 2351 ntBASIC17.77■□□□□ 0.44
Usp47Q8BY87 Gm18626-201ENSMUST00000221512 1409 ntBASIC17.77■□□□□ 0.44
Usp47Q8BY87 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Usp47Q8BY87 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Usp47Q8BY87 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Usp47Q8BY87 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC17.77■□□□□ 0.43
Usp47Q8BY87 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Gm43908-201ENSMUST00000205074 1472 ntBASIC17.76■□□□□ 0.43
Usp47Q8BY87 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Rprl1-202ENSMUST00000198476 238 ntBASIC17.76■□□□□ 0.43
Usp47Q8BY87 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp47Q8BY87 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm2420-201ENSMUST00000119864 2149 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm45495-201ENSMUST00000200940 1700 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm14644-201ENSMUST00000116671 647 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm29199-201ENSMUST00000187766 775 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm45598-202ENSMUST00000210719 986 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 AC123665.1-201ENSMUST00000228204 438 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm9996-201ENSMUST00000070359 913 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm4735-201ENSMUST00000138679 1302 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 Gm5855-201ENSMUST00000200240 1305 ntBASIC17.75■□□□□ 0.43
Usp47Q8BY87 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp47Q8BY87 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms