Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Gm14760-201ENSMUST00000121831 999 ntBASIC17.29■□□□□ 0.36
Usp40Q8BWR4 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Gm9230-201ENSMUST00000188228 532 ntBASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Gm45643-201ENSMUST00000211364 1484 ntBASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp40Q8BWR4 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Zkscan3-207ENSMUST00000223831 2101 ntBASIC17.28■□□□□ 0.36
Usp40Q8BWR4 AC093022.5-201ENSMUST00000226841 1079 ntBASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp40Q8BWR4 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Gm6198-201ENSMUST00000191337 2929 ntBASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Gm12380-201ENSMUST00000119012 544 ntBASIC17.27■□□□□ 0.36
Usp40Q8BWR4 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Gm12286-201ENSMUST00000119246 1002 ntBASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Gm12176-201ENSMUST00000121420 875 ntBASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Gm21027-201ENSMUST00000219300 1236 ntBASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Usp40Q8BWR4 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Gm6210-201ENSMUST00000204734 1942 ntBASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp40Q8BWR4 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Gm17040-202ENSMUST00000170597 889 ntBASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Gm44958-201ENSMUST00000203734 736 ntBASIC17.26■□□□□ 0.35
Usp40Q8BWR4 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp40Q8BWR4 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms