Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Gm12314-201ENSMUST00000118104 538 ntBASIC14.91□□□□□ -0.02
Trim56Q80VI1 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Gm37201-201ENSMUST00000191845 523 ntBASIC14.91□□□□□ -0.02
Trim56Q80VI1 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.91□□□□□ -0.02
Trim56Q80VI1 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.91□□□□□ -0.02
Trim56Q80VI1 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.9□□□□□ -0.02
Trim56Q80VI1 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Gm14999-201ENSMUST00000121039 624 ntBASIC14.9□□□□□ -0.02
Trim56Q80VI1 Gm27243-201ENSMUST00000183964 521 ntBASIC14.9□□□□□ -0.02
Trim56Q80VI1 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC14.9□□□□□ -0.02
Trim56Q80VI1 AC169036.1-201ENSMUST00000227994 296 ntBASIC14.9□□□□□ -0.02
Trim56Q80VI1 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 AC154262.2-202ENSMUST00000225158 1331 ntBASIC14.9□□□□□ -0.02
Trim56Q80VI1 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trim56Q80VI1 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm2673-201ENSMUST00000120958 1608 ntBASIC14.89□□□□□ -0.03
Trim56Q80VI1 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms