Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm7224-201ENSMUST00000121359 2066 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Dctn4-202ENSMUST00000223590 1530 ntBASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Gm12502-201ENSMUST00000120197 444 ntBASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Gm44124-201ENSMUST00000204159 472 ntBASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.15□□□□□ -0.14
Usp49Q6P9L4 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Usp49Q6P9L4 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Usp49Q6P9L4 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm18227-201ENSMUST00000211082 1468 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Daam2-202ENSMUST00000224595 1926 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm24231-201ENSMUST00000104315 133 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm5863-201ENSMUST00000121760 1008 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Mir1982-201ENSMUST00000157368 74 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm3890-201ENSMUST00000182416 207 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm8565-201ENSMUST00000183259 1014 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 AC167013.1-201ENSMUST00000228592 202 ntBASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp49Q6P9L4 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC14.13□□□□□ -0.15
Usp49Q6P9L4 Gm8738-201ENSMUST00000172606 329 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms