Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm5940-201ENSMUST00000117582 1068 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC12.75□□□□□ -0.37
Six4Q61321 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Rmrp-201ENSMUST00000157463 271 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Six4Q61321 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Six4Q61321 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Gm27501-201ENSMUST00000183599 107 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Gm29396-201ENSMUST00000185659 716 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.75□□□□□ -0.37
Six4Q61321 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.75□□□□□ -0.37
Six4Q61321 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.75□□□□□ -0.37
Six4Q61321 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.75□□□□□ -0.37
Six4Q61321 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.75□□□□□ -0.37
Six4Q61321 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Gm7399-201ENSMUST00000032395 858 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Gm9899-201ENSMUST00000065519 555 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Gm8399-201ENSMUST00000082300 1117 ntBASIC12.75□□□□□ -0.37
Six4Q61321 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Six4Q61321 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Six4Q61321 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Six4Q61321 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.75□□□□□ -0.37
Six4Q61321 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.74□□□□□ -0.37
Six4Q61321 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.74□□□□□ -0.37
Six4Q61321 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Mospd4-201ENSMUST00000180618 576 ntBASIC12.74□□□□□ -0.37
Six4Q61321 Gm27516-201ENSMUST00000184237 98 ntBASIC12.74□□□□□ -0.37
Six4Q61321 Mir8109-201ENSMUST00000184375 117 ntBASIC12.74□□□□□ -0.37
Six4Q61321 Gm42627-201ENSMUST00000197347 224 ntBASIC12.74□□□□□ -0.37
Six4Q61321 Gm44974-201ENSMUST00000206387 1279 ntBASIC12.74□□□□□ -0.37
Six4Q61321 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.74□□□□□ -0.37
Six4Q61321 Gm10608-202ENSMUST00000213924 676 ntBASIC12.74□□□□□ -0.37
Six4Q61321 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.74□□□□□ -0.37
Six4Q61321 Gm39404-201ENSMUST00000216350 313 ntBASIC12.74□□□□□ -0.37
Six4Q61321 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
Six4Q61321 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Six4Q61321 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Six4Q61321 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Six4Q61321 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Six4Q61321 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC12.74□□□□□ -0.37
Six4Q61321 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Six4Q61321 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Six4Q61321 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Gm13342-201ENSMUST00000121055 207 ntBASIC12.73□□□□□ -0.37
Six4Q61321 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.73□□□□□ -0.37
Six4Q61321 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.73□□□□□ -0.37
Six4Q61321 Gm9022-201ENSMUST00000182482 992 ntBASIC12.73□□□□□ -0.37
Six4Q61321 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC12.73□□□□□ -0.37
Six4Q61321 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC12.73□□□□□ -0.37
Six4Q61321 Gm7046-201ENSMUST00000221351 977 ntBASIC12.73□□□□□ -0.37
Six4Q61321 Gm8227-201ENSMUST00000223306 571 ntBASIC12.73□□□□□ -0.37
Six4Q61321 AC125209.1-201ENSMUST00000225812 766 ntBASIC12.73□□□□□ -0.37
Six4Q61321 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Six4Q61321 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Six4Q61321 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms